When you do a coupled return- when you are in "FILE" you will see NETFILE and each of your names beside it- It is possible that you simply clicked on NETFILE beside your name- thinking it filed both. You will need to return and click on NETFILE beside your wife's name. You both will have a confirmation number.

I completed through the whole process in turbo tax for my wife' and mine tax returns and got the messages that both file were auto filed separately successfully. I got my refund but CRA did not receive receive my wife's

We are sorry to hear you are having this problem. Please review our TurboTax FAQ link below for guidance.

How do I know if my return was filed using NETFILE and received by the CRA?

If you have filed a coupled return, and your wife's return has not been filed, then open your tax return and click on the "File" tab, you will see your wife's return that needs to be filed and proceed from there to Netfile her return as indicated in our TurboTax FAQ link here: In the online edition of TurboTax, how do I submit my tax return to CRA using the NETFILE service?

Thank you for using TurboTax.