I figured the negative balance would rectify itself once data was entered. Where is the negative balance coming from?
To clarify, by negative balance, you mean that your spouse owes money to CRA?
The amount of tax due depends on your income. The more you earn, the higher your calculated income tax will be. This is called a progressive (or graduated) tax system.
Income tax brackets are ranges of income on which a set rate of tax is applied.
Canada Taxes 2024: Federal Tax Brackets, Rates and Credits
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