What to do if I filed an amended return that has less refund than the original but I haven't cashed in the cheque for the original yet?

I filed a tax return without declaring my T2202 so I got a huge refund from the working tax income. I received the notice of assessment and the cheque for it but I did not cash it in. I then sent the amendment request for which my refund is a lot lower than it original was, and am waiting for the CRA to reply back. Should I hold off on cashing in the cheque? I'm not sure how this works

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