I'm concerned I may be double counting my Self- Employment income. When a T4A slip is filed, does it also show up under self employment income automatically?

This is mainly a Turbotax software question.

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If you receive a T4A with Box 20 or Box 48 amounts, you are indeed self-employed for tax purposes as both of these boxes are used exclusively to report self-employment income. You're either a contractor or you've earned income from commission-based activities.