Review your entries on your T5008, ensure all the relevant boxes are completed (percentage holdings, cost /adjusted cost base, proceeds from settlement) and basically you need to fill four main boxes in your T5008:
Box 20 for cost
Box 21 for Proceeds
Your percentage (whether you own the whole stock or investment or not)
Type of Income (capital gain or Investment)
You should see your capital gains reflected on your tax return.
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