What type of slips do you have? If it's the T5008, do they all have the type of income & Date of Disposition entered? Is the data showing on the Schedule 3 and not the T1 or is it missing from both?

I didn't check the schedule 3 but it was missing from the T1 , but was in my t5008 slip entry.

This all occurred after the latest turbotax in-line update. Prior to this all the data was correct.

I did however go to the T5008 slip and clicked enter , even though the amounts were correct and it updated the T1 so that was fixed, but how can a user have to do this after an update? If he doesn't do that, his tax return is massively wrong?

As you can see from the "DRAFT" message on all the forms, the forms are not finalized yet. So, this means that there might be changes between now and when the finalized versions of the forms are released.